Broad genomic screening and metagenomic methods can add context when conventional tests leave questions open.
RESEARCH & EVIDENCE
Stay curious.
Go deeper.
Explore the research questions and publications behind HaystackAnalytics’ work in clinical genomics.
RESEARCH THEMES
Three questions.
One deeper view.
The company’s articles and publications move between disease biology, sequencing methods, and the clinical use of data.
Whole-genome sequencing research explores resistance markers, strain variation and transmission patterns in TB.
Automated bioinformatics and readable reports are central themes in HaystackAnalytics’ approach to clinical genomics.
RESEARCH & PUBLICATIONS / 2016 TO 2022
Evidence moves
us forward.
18 papers
Publications and related literature listed in the HaystackAnalytics research archive.
View original archive
FEATURED PAPER / 0118 Dec 2022
Whole-genome sequencing of presumptive MDR-TB isolates from a tertiary healthcare setting in Mumbai
Amrutraj Zade, Sanchi Shah, Nilma Hirani, Kiran Kondabagil, Ameeta Joshi, Anirvan Chatterjee
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02 / 18
0215 Dec 2022
COVID-19 and global childhood tuberculosis notifications
Sachin Atre, Anirvan Chatterjee, Maha Farhat
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037 Dec 2022
Development of a PNA–DiSc2 based portable absorbance platform for the detection of pathogen nucleic acids
Shailesh B. Lad, Shomdutta Roy, Jijo Easo George, Himadri Chakraborti, Saumitra Lalsare, Bikash Barik, Arushi Singh, Amrutraj Zade, Sachee Agrawal, Jayanthi Shastri, Anirvan Chatterjee, Kantimay Das Gupta, Debjani Paul and Kiran Kondabagil
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043 Dec 2022
Giant viral genomic signatures in the previously reported gut metagenomes of pre-school children in rural India
Anirvan Chatterjee and Kiran Kondabagil
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0518 Oct 2021
Optimization of sepsis therapy based on patient-specific digital precision diagnostics using next generation sequencing (DigiSep-Trial)
Brenner T, Skarabis A, Stevens P, et al
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0623 Dec 2020
Analysis of serial multidrug-resistant tuberculosis strains causing treatment failure and within-host evolution by whole genome sequencing
Chen X, He G, Lin S, Wang S, Sun F, Chen J, Zhang W
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0712 Dec 2020
Edge implementation with Intel NUC Mini PCs for MDR, XDR and XXDR tuberculosis genome informatics pipeline
Anirvan Chatterjee, Ramanathan Sethuraman, Lakshminarasimhan Ranganathan
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0824 Apr 2020
Prediction of treatment outcomes for multidrug-resistant tuberculosis by whole-genome sequencing
He G, Chen X, Chen J, Zhang W
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0921 Feb 2020
Whole genome sequencing of Mycobacterium tuberculosis isolates and clinical outcomes of patients treated for multidrug-resistant tuberculosis in Tanzania
Katale BZ, Mbelele PM, Lema NA, et al
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1026 Jul 2019
Mimivirus encodes a multifunctional primase with DNA/RNA polymerase, terminal transferase and translesion synthesis activities
Ankita Gupta, Shailesh B. Lad, Pratibha P. Ghodke, P. I. Pradeepkumar, Kiran Kondabagil
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1124 May 2019
Cost-effectiveness of molecular diagnostic assays for the therapy of severe sepsis and septic shock in the emergency department
Zacharioudakis IM, Zervou FN, Shehadeh F, Mylonakis E
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126 Mar 2019
Genomic and metagenomic signatures of giant viruses are ubiquitous in water samples from Mumbai, India
Anirvan Chatterjee, Thomas Sicheritz-Pontén, Rajesh Yadav, Kiran Kondabagil
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1326 Feb 2019
Whole Genome Sequencing of Mycobacterium tuberculosis Clinical Isolates From India Reveals Genetic Heterogeneity and Region-Specific Variations That Might Affect Drug Susceptibility
Advani J, Verma R, Chatterjee O, et al
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1422 Jan 2018
Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis
Francesc Coll, Jody Phelan, Grant A. Hill-Cawthorne, Anirvan Chatterjee, et al
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1513 Dec 2017
Whole genome sequencing of clinical strains of Mycobacterium tuberculosis from Mumbai, India: a potential tool for determining drug-resistance and strain lineage
Anirvan Chatterjee, Kayzad Nilgiriwala, Dhananjaya Saranath, Camilla Rodrigues, Nerges Mistry
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1625 Apr 2017
Same-Day Diagnostic and Surveillance Data for Tuberculosis via Whole-Genome Sequencing of Direct Respiratory Samples
Antonina A. Votintseva, Phelim Bradley, Louise Pankhurst, Anirvan Chatterjee, et al
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171 Jan 2017
The Effect of Molecular Rapid Diagnostic Testing on Clinical Outcomes in Bloodstream Infections: A Systematic Review and Meta-analysis
Timbrook TT, Morton JB, McConeghy KW, Caffrey AR, Mylonakis E, LaPlante KL
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1816 Jun 2016
Complete Genome Sequence of a New Megavirus Family Member Isolated from an Inland Water Lake for the First Time in India
Anirvan Chatterjee, Farhan Ali, Disha Bange, Kiran Kondabagil
Read publicationPublication details and imagery: HaystackAnalytics research archive.
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