Broad genomic screening and metagenomic methods can add context when conventional tests leave questions open.
RESEARCH & EVIDENCE
Stay curious.
Go deeper.
Explore the research questions and publications behind HaystackAnalytics’ work in clinical genomics.
RESEARCH THEMES
Three questions.
One deeper view.
The company’s articles and publications move between disease biology, sequencing methods, and the clinical use of data.
Whole-genome sequencing research explores resistance markers, strain variation and transmission patterns in TB.
Automated bioinformatics and readable reports are central themes in HaystackAnalytics’ approach to clinical genomics.
RESEARCH & PUBLICATIONS
Evidence moves
us forward.
01
18 Dec 2022
↗02Whole-genome sequencing of presumptive MDR-TB isolates from a tertiary healthcare setting in Mumbai
Amrutraj Zade, Sanchi Shah, Nilma Hirani, Kiran Kondabagil, Ameeta Joshi, Anirvan Chatterjee
15 Dec 2022
↗03COVID-19 and global childhood tuberculosis notifications
Sachin Atre, Anirvan Chatterjee, Maha Farhat
7 Dec 2022
↗04Development of a PNA–DiSc2 based portable absorbance platform for the detection of pathogen nucleic acids
Shailesh B. Lad, Shomdutta Roy, Jijo Easo George, Himadri Chakraborti, Saumitra Lalsare, Bikash Barik, Arushi Singh, Amrutraj Zade, Sachee Agrawal, Jayanthi Shastri, Anirvan Chatterjee, Kantimay Das Gupta, Debjani Paul and Kiran Kondabagil
3 Dec 2022
↗05Giant viral genomic signatures in the previously reported gut metagenomes of pre-school children in rural India
Anirvan Chatterjee and Kiran Kondabagil
18 Oct 2021
↗06Optimization of sepsis therapy based on patient-specific digital precision diagnostics using next generation sequencing (DigiSep-Trial)
Brenner T, Skarabis A, Stevens P, et al
23 Dec 2020
↗07Analysis of serial multidrug-resistant tuberculosis strains causing treatment failure and within-host evolution by whole genome sequencing
Chen X, He G, Lin S, Wang S, Sun F, Chen J, Zhang W
12 Dec 2020
↗08Edge implementation with Intel NUC Mini PCs for MDR, XDR and XXDR tuberculosis genome informatics pipeline
Anirvan Chatterjee, Ramanathan Sethuraman, Lakshminarasimhan Ranganathan
24 Apr 2020
↗09Prediction of treatment outcomes for multidrug-resistant tuberculosis by whole-genome sequencing
He G, Chen X, Chen J, Zhang W
21 Feb 2020
↗10Whole genome sequencing of Mycobacterium tuberculosis isolates and clinical outcomes of patients treated for multidrug-resistant tuberculosis in Tanzania
Katale BZ, Mbelele PM, Lema NA, et al
26 Jul 2019
↗11Mimivirus encodes a multifunctional primase with DNA/RNA polymerase, terminal transferase and translesion synthesis activities
Ankita Gupta, Shailesh B. Lad, Pratibha P. Ghodke, P. I. Pradeepkumar, Kiran Kondabagil
24 May 2019
↗12Cost-effectiveness of molecular diagnostic assays for the therapy of severe sepsis and septic shock in the emergency department
Zacharioudakis IM, Zervou FN, Shehadeh F, Mylonakis E
6 Mar 2019
↗13Genomic and metagenomic signatures of giant viruses are ubiquitous in water samples from Mumbai, India
Anirvan Chatterjee, Thomas Sicheritz-Pontén, Rajesh Yadav, Kiran Kondabagil
26 Feb 2019
↗14Whole Genome Sequencing of Mycobacterium tuberculosis Clinical Isolates From India Reveals Genetic Heterogeneity and Region-Specific Variations That Might Affect Drug Susceptibility
Advani J, Verma R, Chatterjee O, et al
22 Jan 2018
↗15Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis
Francesc Coll, Jody Phelan, Grant A. Hill-Cawthorne, Anirvan Chatterjee, et al
13 Dec 2017
↗16Whole genome sequencing of clinical strains of Mycobacterium tuberculosis from Mumbai, India: a potential tool for determining drug-resistance and strain lineage
Anirvan Chatterjee, Kayzad Nilgiriwala, Dhananjaya Saranath, Camilla Rodrigues, Nerges Mistry
25 Apr 2017
↗17Same-Day Diagnostic and Surveillance Data for Tuberculosis via Whole-Genome Sequencing of Direct Respiratory Samples
Antonina A. Votintseva, Phelim Bradley, Louise Pankhurst, Anirvan Chatterjee, et al
1 Jan 2017
↗18The Effect of Molecular Rapid Diagnostic Testing on Clinical Outcomes in Bloodstream Infections: A Systematic Review and Meta-analysis
Timbrook TT, Morton JB, McConeghy KW, Caffrey AR, Mylonakis E, LaPlante KL
16 Jun 2016
↗Complete Genome Sequence of a New Megavirus Family Member Isolated from an Inland Water Lake for the First Time in India
Anirvan Chatterjee, Farhan Ali, Disha Bange, Kiran Kondabagil
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